PH01000488G0670's details annotation
1.Annotation
ICBR annotation: neighbor of COX4, putative, expressed
Blast result AT5G55940 : 3.20E-39
Blast annotation: Uncharacterised protein family (UPF0172)
2.Location
Scaffold: PH01000488
Strand: -
| Region | Start | End |
| gene | 583427 | 586341 |
| mRNA | 583427 | 586341 |
| exon | 583427 | 583595 |
| exon | 583980 | 584039 |
| exon | 584138 | 586341 |
| CDS | 583536 | 583595 |
| CDS | 583980 | 584039 |
| CDS | 584138 | 584506 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000514 | cell redox homeostasis, protein disulfide oxidoreductase activity, nitrogen compound metabolic process, electron carrier activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, |
| coexpression network | CFinderM000516 | oligopeptide transport, nitrogen compound metabolic process, |
| coexpression network | CFinderM001107 | clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, structural molecule activity, vesicle-mediated transport, mitochondrial_respiratory_chain_complex_III intracellular protein transport, mitochondrial electron transport, ubiquinol to cytochrome c, negative regulation of catalytic activity, identical protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03665.12 | UPF0172 | 7 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.