PH01000490G0100's details annotation
1.Annotation
ICBR annotation: WD repeat-containing protein 12, putative, expressed
Blast result AT5G15550 : 4.00E-164
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000490
Strand: +
| Region | Start | End |
| gene | 35802 | 41402 |
| mRNA | 35802 | 41402 |
| exon | 35802 | 36471 |
| exon | 36555 | 36655 |
| exon | 36757 | 36863 |
| exon | 38201 | 38236 |
| exon | 38374 | 38456 |
| exon | 38593 | 38660 |
| exon | 38759 | 38869 |
| exon | 38961 | 39095 |
| exon | 39588 | 39731 |
| exon | 40105 | 40213 |
| exon | 40294 | 40430 |
| exon | 40527 | 40562 |
| exon | 40641 | 41402 |
| CDS | 36312 | 36471 |
| CDS | 36555 | 36655 |
| CDS | 36757 | 36863 |
| CDS | 38201 | 38236 |
| CDS | 38374 | 38456 |
| CDS | 38593 | 38660 |
| CDS | 38759 | 38869 |
| CDS | 38961 | 39095 |
| CDS | 39588 | 39731 |
| CDS | 40105 | 40213 |
| CDS | 40294 | 40430 |
| CDS | 40527 | 40562 |
| CDS | 40641 | 40733 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08154.11 | NLE | 13 | 80 |
| PF00400.31 | WD40 | 110 | 138 |
| PF00400.31 | WD40 | 143 | 184 |
| PF00400.31 | WD40 | 202 | 235 |
| PF00400.31 | WD40 | 271 | 305 |
| PF00400.31 | WD40 | 356 | 393 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.