Annotation of co-expression genes

PH01000492G0110's details annotation

1.Annotation

ICBR annotation: neutral/alkaline invertase, putative, expressed

Blast result AT1G56560 : 0.00E+00
Blast annotation: Plant neutral invertase family protein

2.Location

Scaffold: PH01000492
Strand: -

RegionStartEnd
gene6665171419
mRNA6665171419
exon6665167040
exon6713167179
exon6735367541
exon6775768076
exon6816768215
exon6838968882
exon6917569386
exon6954169706
exon7068171419
CDS6671767040
CDS6713167179
CDS6735367541
CDS6775768076
CDS6816768215
CDS6838968882
CDS6917569386
CDS6954169706
CDS7068171277

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000662isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway,
glycolipid transport,
Terpenoid_backbone_biosynthesis
glycopeptide_alpha-N-acetylgalactosaminidase_activity
glycolipid binding,
glycolipid transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12899.6Glyco_hydro_100133573
PF12899.6Glyco_hydro_100612759

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0033926glycopeptide alpha-N-acetylgalactosaminidase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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