PH01000494G0890's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G53650 : 3.00E-91
Blast annotation: CTC-interacting domain 8
2.Location
Scaffold: PH01000494
Strand: +
| Region | Start | End |
| gene | 579723 | 587525 |
| mRNA | 579723 | 587525 |
| exon | 579723 | 580198 |
| exon | 580713 | 580823 |
| exon | 580917 | 580961 |
| exon | 582804 | 582983 |
| exon | 583221 | 583293 |
| exon | 583380 | 583492 |
| exon | 583594 | 583653 |
| exon | 584676 | 584723 |
| exon | 584818 | 584886 |
| exon | 586836 | 587525 |
| CDS | 579788 | 580198 |
| CDS | 580713 | 580823 |
| CDS | 580917 | 580961 |
| CDS | 582804 | 582983 |
| CDS | 583221 | 583293 |
| CDS | 583380 | 583492 |
| CDS | 583594 | 583653 |
| CDS | 584676 | 584723 |
| CDS | 584818 | 584886 |
| CDS | 586836 | 586904 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 166 | 228 |
| PF00076.21 | RRM_1 | 263 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.