PH01000495G0780's details annotation
1.Annotation
ICBR annotation: kinase, pfkB family, putative, expressed
Blast result AT1G49350 : 2.10E-66
Blast annotation: pfkB-like carbohydrate kinase family protein
2.Location
Scaffold: PH01000495
Strand: +
| Region | Start | End |
| gene | 653367 | 661315 |
| mRNA | 653367 | 661315 |
| exon | 653367 | 654274 |
| exon | 654417 | 654533 |
| exon | 655404 | 655506 |
| exon | 655631 | 655678 |
| exon | 657245 | 657342 |
| exon | 657499 | 657613 |
| exon | 658044 | 658126 |
| exon | 658242 | 658634 |
| exon | 659316 | 659383 |
| exon | 660537 | 661315 |
| CDS | 654185 | 654274 |
| CDS | 654417 | 654533 |
| CDS | 655404 | 655506 |
| CDS | 655631 | 655678 |
| CDS | 657245 | 657342 |
| CDS | 657499 | 657613 |
| CDS | 658044 | 658126 |
| CDS | 658242 | 658634 |
| CDS | 659316 | 659383 |
| CDS | 660537 | 660747 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00294.23 | PfkB | 44 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004747 | ribokinase activity |
| GO:0006014 | D-ribose metabolic process |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.