PH01000496G0330's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase HAIKU2 precursor, putative, expressed
Blast result AT5G49660 : 2.00E-167
Blast annotation: Leucine-rich repeat transmembrane protein kinase family protein
2.Location
Scaffold: PH01000496
Strand: +
| Region | Start | End |
| gene | 229519 | 234317 |
| mRNA | 229519 | 234317 |
| exon | 229519 | 231158 |
| exon | 232206 | 232411 |
| exon | 232522 | 233500 |
| exon | 233538 | 233730 |
| exon | 233871 | 234317 |
| CDS | 230925 | 231158 |
| CDS | 232206 | 232411 |
| CDS | 232522 | 233500 |
| CDS | 233538 | 233730 |
| CDS | 233871 | 234250 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000088 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) Phenylpropanoid_biosynthesis Phenylalanine_metabolism Methane_metabolism |
| coexpression network | CFinderM000210 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) RLK-Pelle_L-LEC (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) |
| coexpression network | CFinderM000620 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000963 | RLK-Pelle_LRR-XI-1 (from iTAK) Others Transcription_Regulator(from iTAK) zinc ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13855.5 | LRR_8 | 173 | 231 |
| PF00069.24 | Pkinase | 371 | 634 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.