PH01000497G0700's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT3G23060 : 1.10E-31
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000497
Strand: -
| Region | Start | End |
| gene | 516655 | 522960 |
| mRNA | 516655 | 522960 |
| exon | 516655 | 516985 |
| exon | 517055 | 517084 |
| exon | 517605 | 517677 |
| exon | 518107 | 518157 |
| exon | 518253 | 518713 |
| exon | 518808 | 519168 |
| exon | 520017 | 520145 |
| exon | 520868 | 520967 |
| exon | 522635 | 522960 |
| CDS | 516809 | 516985 |
| CDS | 517055 | 517084 |
| CDS | 517605 | 517677 |
| CDS | 518107 | 518157 |
| CDS | 518253 | 518713 |
| CDS | 518808 | 519168 |
| CDS | 520017 | 520145 |
| CDS | 520868 | 520967 |
| CDS | 522635 | 522755 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13923.5 | zf-C3HC4_2 | 21 | 61 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.