Annotation of co-expression genes

PH01000497G0750's details annotation

1.Annotation

ICBR annotation: protein transport protein Sec23B, putative, expressed

Blast result AT5G43670 : 0.00E+00
Blast annotation: Sec23/Sec24 protein transport family protein

2.Location

Scaffold: PH01000497
Strand: +

RegionStartEnd
gene570083579017
mRNA570083579017
exon570083571341
exon571983572548
exon574510574713
exon574804574899
exon575486579017
CDS571275571341
CDS571983572548
CDS574510574713
CDS574804574899
CDS575486577147

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04810.14zf-Sec23_Sec2465104
PF04811.14Sec23_trunk138500
PF01603.19B56222279
PF08033.11Sec23_BS510610
PF04815.14Sec23_helical622717
PF00626.21Gelsolin736822

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumprotein transport protein SEC23ko04141K14006

10.Gene Ontology

GO AccessionGO Annotation
GO:0000159protein phosphatase type 2A complex
GO:0005488binding
GO:0005515protein binding
GO:0006886intracellular protein transport
GO:0006888ER to Golgi vesicle-mediated transport
GO:0007165signal transduction
GO:0008270zinc ion binding
GO:0008601protein phosphatase type 2A regulator activity
GO:0030127COPII vesicle coat

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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