PH01000498G0100's details annotation
1.Annotation
ICBR annotation: PP2A regulatory subunit TAP46, putative, expressed
Blast result AT5G53000 : 2.00E-113
Blast annotation: 2A phosphatase associated protein of 46 kD
2.Location
Scaffold: PH01000498
Strand: -
| Region | Start | End |
| gene | 66878 | 72824 |
| mRNA | 66878 | 72824 |
| exon | 66878 | 67455 |
| exon | 68402 | 68679 |
| exon | 69355 | 69426 |
| exon | 69555 | 69590 |
| exon | 70388 | 70549 |
| exon | 70745 | 70849 |
| exon | 70984 | 71070 |
| exon | 71244 | 71291 |
| exon | 71386 | 72824 |
| CDS | 67221 | 67455 |
| CDS | 68402 | 68679 |
| CDS | 69355 | 69426 |
| CDS | 69555 | 69590 |
| CDS | 70388 | 70549 |
| CDS | 70745 | 70849 |
| CDS | 70984 | 71070 |
| CDS | 71244 | 71291 |
| CDS | 71386 | 71535 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04177.11 | TAP42 | 66 | 378 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009966 | regulation of signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.