PH01000500G0030's details annotation
1.Annotation
ICBR annotation: ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
Blast result AT1G30510 : 1.00E-175
Blast annotation: root FNR 2
2.Location
Scaffold: PH01000500
Strand: +
| Region | Start | End |
| gene | 39634 | 44618 |
| mRNA | 39634 | 44618 |
| exon | 39634 | 40666 |
| exon | 40751 | 40807 |
| exon | 41903 | 42238 |
| exon | 42809 | 43028 |
| exon | 43801 | 44041 |
| exon | 44241 | 44618 |
| CDS | 40643 | 40666 |
| CDS | 40751 | 40807 |
| CDS | 41903 | 42238 |
| CDS | 42809 | 43028 |
| CDS | 43801 | 44041 |
| CDS | 44241 | 44499 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00175.20 | NAD_binding_1 | 232 | 346 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Photosynthesis | ferredoxin--NADP+ reductase [EC:1.18.1.2] | ko00195 | K02641 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004324 | ferredoxin-NADP+ reductase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0042651 | thylakoid membrane |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0050661 | NADP binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.