PH01000500G0190's details annotation
1.Annotation
ICBR annotation: photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000500
Strand: -
| Region | Start | End |
| gene | 123037 | 126394 |
| mRNA | 123037 | 126394 |
| exon | 123037 | 123291 |
| exon | 123377 | 123459 |
| exon | 123545 | 123600 |
| exon | 125815 | 125873 |
| exon | 126190 | 126394 |
| CDS | 123143 | 123291 |
| CDS | 123377 | 123459 |
| CDS | 123545 | 123600 |
| CDS | 125815 | 125873 |
| CDS | 126190 | 126232 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04725.11 | PsbR | 5 | 54 |
| PF04725.11 | PsbR | 98 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009523 | photosystem II |
| GO:0009654 | oxygen evolving complex |
| GO:0015979 | photosynthesis |
| GO:0042651 | thylakoid membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.