PH01000501G0660's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT1G25500 : 4.00E-132
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01000501
Strand: -
| Region | Start | End |
| gene | 490553 | 498173 |
| mRNA | 490553 | 498173 |
| exon | 490553 | 491626 |
| exon | 492465 | 492581 |
| exon | 492794 | 492882 |
| exon | 492961 | 493027 |
| exon | 494131 | 494247 |
| exon | 494378 | 494602 |
| exon | 494699 | 494882 |
| exon | 496365 | 496388 |
| exon | 497583 | 498173 |
| CDS | 491468 | 491626 |
| CDS | 492465 | 492581 |
| CDS | 492794 | 492882 |
| CDS | 492961 | 493027 |
| CDS | 494131 | 494247 |
| CDS | 494378 | 494602 |
| CDS | 494699 | 494882 |
| CDS | 496365 | 496388 |
| CDS | 497583 | 498160 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 186 | 400 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.