PH01000502G0520's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT1G72770 : 5.40E-85
Blast annotation: HYPERSENSITIVE TO ABA1
2.Location
Scaffold: PH01000502
Strand: -
| Region | Start | End |
| gene | 417313 | 420799 |
| mRNA | 417313 | 420799 |
| exon | 417313 | 418177 |
| exon | 419286 | 419391 |
| exon | 419463 | 419807 |
| exon | 420017 | 420799 |
| CDS | 417837 | 418177 |
| CDS | 419286 | 419391 |
| CDS | 419463 | 419807 |
| CDS | 420017 | 420259 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000848 | GT66 GlycosylTransferases phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, oligosaccharyl transferase activity, phenylalanine-tRNA ligase activity, tRNA binding, protein glycosylation, Various_types_of_N-glycan_biosynthesis Aminoacyl-tRNA_biosynthesis N-Glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 151 | 327 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | protein phosphatase 2C [EC:3.1.3.16] | ko04075 | K14497 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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© 2017 All Rights Reserved.