PH01000503G0730's details annotation
1.Annotation
ICBR annotation: CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT2G43790 : 2.00E-143
Blast annotation: MAP kinase 6
2.Location
Scaffold: PH01000503
Strand: +
| Region | Start | End |
| gene | 465262 | 469959 |
| mRNA | 465262 | 469959 |
| exon | 465262 | 465606 |
| exon | 465684 | 465813 |
| exon | 468108 | 468245 |
| exon | 469542 | 469959 |
| CDS | 465404 | 465606 |
| CDS | 465684 | 465813 |
| CDS | 468108 | 468245 |
| CDS | 469542 | 469907 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 1 | 232 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | mitogen-activated protein kinase 6 [EC:2.7.11.24] | ko04075 | K14512 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.