PH01000504G0570's details annotation
1.Annotation
ICBR annotation: pectinacetylesterase domain containing protein, expressed
Blast result AT2G46930 : 5.00E-132
Blast annotation: Pectinacetylesterase family protein
2.Location
Scaffold: PH01000504
Strand: +
| Region | Start | End |
| gene | 428688 | 432382 |
| mRNA | 428688 | 432382 |
| exon | 428688 | 429078 |
| exon | 429880 | 429962 |
| exon | 430092 | 430221 |
| exon | 430320 | 430393 |
| exon | 430470 | 430556 |
| exon | 431030 | 431172 |
| exon | 431267 | 431381 |
| exon | 431482 | 431559 |
| exon | 431693 | 431798 |
| exon | 431917 | 432065 |
| exon | 432183 | 432382 |
| CDS | 428865 | 429078 |
| CDS | 429880 | 429962 |
| CDS | 430092 | 430221 |
| CDS | 430320 | 430393 |
| CDS | 430470 | 430556 |
| CDS | 431030 | 431172 |
| CDS | 431267 | 431381 |
| CDS | 431482 | 431559 |
| CDS | 431693 | 431798 |
| CDS | 431917 | 432065 |
| CDS | 432183 | 432284 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate_Esterases | CE13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03283.12 | PAE | 53 | 408 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.