PH01000504G0590's details annotation
1.Annotation
ICBR annotation: AGAP010768-PA, putative, expressed
Blast result AT3G62140 : 3.60E-38
Blast annotation: -
2.Location
Scaffold: PH01000504
Strand: +
| Region | Start | End |
| gene | 457580 | 464246 |
| mRNA | 457580 | 464246 |
| exon | 457580 | 458804 |
| exon | 460014 | 460101 |
| exon | 460667 | 460889 |
| exon | 461384 | 461439 |
| exon | 462763 | 462825 |
| exon | 463324 | 463389 |
| exon | 463613 | 464246 |
| CDS | 458539 | 458804 |
| CDS | 460014 | 460101 |
| CDS | 460667 | 460889 |
| CDS | 461384 | 461439 |
| CDS | 462763 | 462825 |
| CDS | 463324 | 463389 |
| CDS | 463613 | 463849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10187.8 | Nefa_Nip30_N | 173 | 232 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.