Annotation of co-expression genes

PH01000505G0650's details annotation

1.Annotation

ICBR annotation: C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed

Blast result AT1G12480 : 4.20E-61
Blast annotation: C4-dicarboxylate transporter/malic acid transport protein

2.Location

Scaffold: PH01000505
Strand: +

RegionStartEnd
gene416896419165
mRNA416896419165
exon416896417744
exon418032419165
CDS417278417744
CDS418032418416

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000391translation release factor activity,
translation release factor activity, codon specific,
potassium ion transport,
translational termination,
malate_transport
solute:hydrogen antiporter activity,
transmembrane transport,
integral to membrane,
coexpression networkCFinderM000482translation release factor activity,
translation release factor activity, codon specific,
translational termination,
translational initiation,
translation initiation factor activity,
coexpression networkCFinderM000676TKL-Pl-4 (from iTAK)
integral_component_of_peroxisomal_membrane
peroxisome_fission
translational initiation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03595.16SLAC18157
PF03595.16SLAC1157210

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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