PH01000505G0810's details annotation
1.Annotation
ICBR annotation: 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
Blast result AT2G16530 : 4.20E-89
Blast annotation: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
2.Location
Scaffold: PH01000505
Strand: +
| Region | Start | End |
| gene | 484871 | 489672 |
| mRNA | 484871 | 489672 |
| exon | 484871 | 485946 |
| exon | 486216 | 486270 |
| exon | 486622 | 487094 |
| exon | 487647 | 487881 |
| exon | 488342 | 488437 |
| exon | 489108 | 489179 |
| exon | 489294 | 489672 |
| CDS | 485768 | 485946 |
| CDS | 486216 | 486270 |
| CDS | 486622 | 487094 |
| CDS | 487647 | 487881 |
| CDS | 488342 | 488437 |
| CDS | 489108 | 489179 |
| CDS | 489294 | 489398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02544.15 | Steroid_dh | 292 | 403 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0006629 | lipid metabolic process |
| GO:0016021 | integral to membrane |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.