PH01000507G0850's details annotation
1.Annotation
ICBR annotation: clathrin assembly protein, putative, expressed
Blast result AT4G40080 : 7.40E-23
Blast annotation: ENTH/ANTH/VHS superfamily protein
2.Location
Scaffold: PH01000507
Strand: +
| Region | Start | End |
| gene | 506608 | 511428 |
| mRNA | 506608 | 511428 |
| exon | 506608 | 510597 |
| exon | 511128 | 511428 |
| CDS | 509627 | 510597 |
| CDS | 511128 | 511137 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
| coexpression network | CFinderM001240 | |
| coexpression network | CFinderM001323 | CMGC_GSK (from iTAK) Glutathione_metabolism Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.