PH01000508G0070's details annotation
1.Annotation
ICBR annotation: tRNA synthetase, putative, expressed
Blast result AT2G33840 : 2.00E-115
Blast annotation: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
2.Location
Scaffold: PH01000508
Strand: +
| Region | Start | End |
| gene | 64596 | 77036 |
| mRNA | 64596 | 77036 |
| exon | 64596 | 65436 |
| exon | 66375 | 66658 |
| exon | 66793 | 66889 |
| exon | 67172 | 67258 |
| exon | 67443 | 67478 |
| exon | 68475 | 68620 |
| exon | 68789 | 68894 |
| exon | 69283 | 69342 |
| exon | 70057 | 70096 |
| exon | 74716 | 74927 |
| exon | 75016 | 75108 |
| exon | 75188 | 75310 |
| exon | 76697 | 77036 |
| CDS | 65221 | 65436 |
| CDS | 66375 | 66658 |
| CDS | 66793 | 66889 |
| CDS | 67172 | 67258 |
| CDS | 67443 | 67478 |
| CDS | 68475 | 68620 |
| CDS | 68789 | 68894 |
| CDS | 69283 | 69342 |
| CDS | 70057 | 70096 |
| CDS | 74716 | 74927 |
| CDS | 75016 | 75108 |
| CDS | 75188 | 75310 |
| CDS | 76697 | 76990 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00579.24 | tRNA-synt_1b | 56 | 199 |
| PF00579.24 | tRNA-synt_1b | 203 | 240 |
| PF00249.30 | Myb_DNA-binding | 360 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | tyrosyl-tRNA synthetase [EC:6.1.1.1] | ko00970 | K01866 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.