PH01000511G0220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G66090 : 7.50E-60
Blast annotation: -
2.Location
Scaffold: PH01000511
Strand: -
| Region | Start | End |
| gene | 117615 | 120137 |
| mRNA | 117615 | 120137 |
| exon | 117615 | 118153 |
| exon | 118236 | 118313 |
| exon | 118422 | 118479 |
| exon | 118772 | 118890 |
| exon | 119186 | 120137 |
| CDS | 117960 | 118153 |
| CDS | 118236 | 118313 |
| CDS | 118422 | 118479 |
| CDS | 118772 | 118890 |
| CDS | 119186 | 119309 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000749 | Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis protein glycosylation, GT66 GlycosylTransferases Protein_processing_in_endoplasmic_reticulum oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity, response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.