Annotation of co-expression genes

PH01000515G0420's details annotation

1.Annotation

ICBR annotation: valyl-tRNA synthetase, putative, expressed

Blast result AT5G16715 : 2.00E-135
Blast annotation: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

2.Location

Scaffold: PH01000515
Strand: +

RegionStartEnd
gene297150306107
mRNA297150306107
exon297150299594
exon299689299776
exon301005301131
exon301670301753
exon301863301957
exon302471302562
exon303088303141
exon304281304333
exon304530304597
exon304885304960
exon305123305206
exon305732306107
CDS299459299594
CDS299689299776
CDS301005301131
CDS301670301753
CDS301863301957
CDS302471302562
CDS303088303141
CDS304281304333
CDS304530304597
CDS304885304960
CDS305123305206
CDS305732305824

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001614nucleotide binding,
ATP binding,
chromosome organization,
valyl-tRNA aminoacylation,
valine-tRNA ligase activity,
GPI anchor biosynthetic process,
chromosome,
endoplasmic reticulum membrane,
DNA metabolic process,
aminoacyl-tRNA_editing_activity
DNA-dependent ATPase activity,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
Homologous_recombination
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00133.21tRNA-synt_172296

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisvalyl-tRNA synthetase [EC:6.1.1.9]ko00970K01873

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0002161aminoacyl-tRNA editing activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0004832valine-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation
GO:0006438valyl-tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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