Annotation of co-expression genes

PH01000516G0220's details annotation

1.Annotation

ICBR annotation: glucan endo-1,3-beta-glucosidase-related, putative, expressed

Blast result AT5G67460 : 7.60E-29
Blast annotation: O-Glycosyl hydrolases family 17 protein

2.Location

Scaffold: PH01000516
Strand: -

RegionStartEnd
gene202888205841
mRNA202888205841
exon202888204473
exon205289205841
CDS203467204473
CDS205289205364

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate-Binding_ModulesCBM43
Glycoside_HydrolasesGH17

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07983.12X8270341

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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