PH01000518G0720's details annotation
1.Annotation
ICBR annotation: OsMADS65 - MADS-box family gene with MIKC* type-box, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000518
Strand: -
| Region | Start | End |
| gene | 568932 | 571851 |
| mRNA | 568932 | 571851 |
| exon | 568932 | 569764 |
| exon | 570354 | 571851 |
| CDS | 569722 | 569764 |
| CDS | 570354 | 570541 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000267 | MADS-M-type Transcription_Regulator(from iTAK) M-type_MADS Transcription_Regulator(from PlantTFDB) bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MADS-M-type |
| Transcription_Regulator(from PlantTFDB) | M-type_MADS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00319.17 | SRF-TF | 10 | 58 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.