PH01000519G0920's details annotation
1.Annotation
ICBR annotation: OsFBK10 - F-box domain and kelch repeat containing protein, expressed
Blast result AT1G74510 : 9.00E-136
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01000519
Strand: -
| Region | Start | End |
| gene | 615411 | 618112 |
| mRNA | 615411 | 618112 |
| exon | 615411 | 618112 |
| CDS | 616519 | 617799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000668 | RLK-Pelle_WAK (from iTAK) polysaccharide_binding protein binding, calcium ion binding, ubiquitin ligase complex, potassium_ion_transmembrane_transport protein ubiquitination, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01344.24 | Kelch_1 | 217 | 263 |
| PF01344.24 | Kelch_1 | 265 | 311 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.