PH01000520G0340's details annotation
1.Annotation
ICBR annotation: ribosomal protein S18 containing protein, expressed
Blast result AT1G07210 : 1.00E-33
Blast annotation: Ribosomal protein S18
2.Location
Scaffold: PH01000520
Strand: +
| Region | Start | End |
| gene | 222902 | 227690 |
| mRNA | 222902 | 227690 |
| exon | 222902 | 224517 |
| exon | 225193 | 225567 |
| exon | 225893 | 225988 |
| exon | 226770 | 226829 |
| exon | 227370 | 227690 |
| CDS | 224296 | 224517 |
| CDS | 225193 | 225567 |
| CDS | 225893 | 225988 |
| CDS | 226770 | 226829 |
| CDS | 227370 | 227570 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000295 | translation, AGC_RSK-2 (from iTAK) CMGC_GSK (from iTAK) Ribosome intracellular, protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01084.19 | Ribosomal_S18 | 227 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.