PH01000521G0030's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta, putative, expressed
Blast result AT1G52360 : 2.00E-51
Blast annotation: Coatomer, beta subunit
2.Location
Scaffold: PH01000521
Strand: -
| Region | Start | End |
| gene | 28303 | 34262 |
| mRNA | 28303 | 34262 |
| exon | 28303 | 28407 |
| exon | 28571 | 28639 |
| exon | 28899 | 29047 |
| exon | 29134 | 29265 |
| exon | 29382 | 29468 |
| exon | 30579 | 30633 |
| exon | 30757 | 30818 |
| exon | 31019 | 31036 |
| exon | 31089 | 31640 |
| exon | 33300 | 34262 |
| CDS | 28395 | 28407 |
| CDS | 28571 | 28639 |
| CDS | 28899 | 29047 |
| CDS | 29134 | 29265 |
| CDS | 29382 | 29468 |
| CDS | 30579 | 30633 |
| CDS | 30757 | 30818 |
| CDS | 31019 | 31036 |
| CDS | 31089 | 31640 |
| CDS | 33300 | 33305 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00635.25 | Motile_Sperm | 77 | 164 |
| PF00400.31 | WD40 | 204 | 227 |
| PF00400.31 | WD40 | 229 | 263 |
| PF00400.31 | WD40 | 272 | 307 |
| PF00400.31 | WD40 | 312 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.