PH01000522G0230's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 11, putative, expressed
Blast result AT2G05170 : 5.70E-42
Blast annotation: vacuolar protein sorting 11
2.Location
Scaffold: PH01000522
Strand: -
| Region | Start | End |
| gene | 187358 | 191987 |
| mRNA | 187358 | 191987 |
| exon | 187358 | 187900 |
| exon | 188114 | 188203 |
| exon | 189334 | 189552 |
| exon | 190076 | 190138 |
| exon | 190273 | 190372 |
| exon | 191371 | 191987 |
| CDS | 187718 | 187900 |
| CDS | 188114 | 188203 |
| CDS | 189334 | 189552 |
| CDS | 190076 | 190138 |
| CDS | 190273 | 190372 |
| CDS | 191371 | 191558 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.