PH01000522G0480's details annotation
1.Annotation
ICBR annotation: DUF647 domain containing protein, putative, expressed
Blast result AT3G45890 : 2.00E-146
Blast annotation: Protein of unknown function, DUF647
2.Location
Scaffold: PH01000522
Strand: -
| Region | Start | End |
| gene | 351465 | 363267 |
| mRNA | 351465 | 363267 |
| exon | 351465 | 352890 |
| exon | 354293 | 354374 |
| exon | 354671 | 354910 |
| exon | 355003 | 355176 |
| exon | 355546 | 355652 |
| exon | 356328 | 356526 |
| exon | 359395 | 359670 |
| exon | 359759 | 360138 |
| exon | 362062 | 363267 |
| CDS | 352796 | 352890 |
| CDS | 354293 | 354374 |
| CDS | 354671 | 354910 |
| CDS | 355003 | 355176 |
| CDS | 355546 | 355652 |
| CDS | 356328 | 356526 |
| CDS | 359395 | 359670 |
| CDS | 359759 | 360138 |
| CDS | 362062 | 362179 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000688 | GT64 GlycosylTransferases Alanine,_aspartate_and_glutamate_metabolism intrinsic to endoplasmic reticulum membrane, Nicotinate_and_nicotinamide_metabolism Terpenoid_backbone_biosynthesis regulation of ARF GTPase activity, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04884.13 | DUF647 | 117 | 257 |
| PF04884.13 | DUF647 | 258 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.