PH01000524G0090's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT3G08820 : 0.00E+00
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000524
Strand: -
| Region | Start | End |
| gene | 65563 | 68078 |
| mRNA | 65563 | 68078 |
| exon | 65563 | 68078 |
| CDS | 65741 | 67690 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000356 | glutaminyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis glutamine-tRNA ligase activity, tRNA aminoacylation, C2H2 Transcription_Regulator(from PlantTFDB) ligase activity, forming aminoacyl-tRNA and related compounds, NAD+ ADP-ribosyltransferase activity, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 114 | 136 |
| PF13041.5 | PPR_2 | 139 | 188 |
| PF01535.19 | PPR | 216 | 240 |
| PF13041.5 | PPR_2 | 241 | 287 |
| PF01535.19 | PPR | 316 | 343 |
| PF01535.19 | PPR | 345 | 373 |
| PF01535.19 | PPR | 416 | 441 |
| PF01535.19 | PPR | 485 | 511 |
| PF14432.5 | DYW_deaminase | 517 | 639 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.