PH01000525G0700's details annotation
1.Annotation
ICBR annotation: ubiquitin conjugating enzyme protein, putative, expressed
Blast result AT2G16920 : 0.00E+00
Blast annotation: ubiquitin-conjugating enzyme 23
2.Location
Scaffold: PH01000525
Strand: -
| Region | Start | End |
| gene | 505600 | 511820 |
| mRNA | 505600 | 511820 |
| exon | 505600 | 506082 |
| exon | 506199 | 506510 |
| exon | 506678 | 506817 |
| exon | 506930 | 506999 |
| exon | 507200 | 507622 |
| exon | 507731 | 507865 |
| exon | 508311 | 511820 |
| CDS | 505813 | 506082 |
| CDS | 506199 | 506510 |
| CDS | 506678 | 506817 |
| CDS | 506930 | 506999 |
| CDS | 507200 | 507622 |
| CDS | 507731 | 507865 |
| CDS | 508311 | 510275 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001028 | peptide-methionine_(R)-S-oxide_reductase_activity metallopeptidase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 852 | 987 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19] | ko04120 | K10581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.