PH01000528G0420's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, family 8, putative
Blast result AT2G38650 : 7.00E-143
Blast annotation: galacturonosyltransferase 7
2.Location
Scaffold: PH01000528
Strand: -
| Region | Start | End |
| gene | 258293 | 265326 |
| mRNA | 258293 | 265326 |
| exon | 258293 | 259485 |
| exon | 259868 | 260413 |
| exon | 260498 | 260852 |
| exon | 261777 | 262072 |
| exon | 262328 | 262377 |
| exon | 262469 | 262571 |
| exon | 263789 | 263857 |
| exon | 263951 | 264010 |
| exon | 264186 | 264233 |
| exon | 264334 | 264362 |
| exon | 264528 | 265326 |
| CDS | 259204 | 259485 |
| CDS | 259868 | 260413 |
| CDS | 260498 | 260852 |
| CDS | 261777 | 262072 |
| CDS | 262328 | 262377 |
| CDS | 262469 | 262571 |
| CDS | 263789 | 263857 |
| CDS | 263951 | 264010 |
| CDS | 264186 | 264233 |
| CDS | 264334 | 264362 |
| CDS | 264528 | 264669 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001871 | Steroid_biosynthesis steroid biosynthetic process, sterol_24-C-methyltransferase_activity |
| coexpression network | CFinderM001880 | RNA_transport C2H2 Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM001885 | Base_excision_repair NAD+ ADP-ribosyltransferase activity, GT29 GlycosylTransferases protein ADP-ribosylation, sialyltransferase activity, protein ubiquitination, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 330 | 631 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.