PH01000529G0100's details annotation
1.Annotation
ICBR annotation: cyclin G-associated kinase, putative, expressed
Blast result AT2G32850 : 5.00E-169
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000529
Strand: -
| Region | Start | End |
| gene | 71841 | 76525 |
| mRNA | 71841 | 76525 |
| exon | 71841 | 72402 |
| exon | 72496 | 73208 |
| exon | 74585 | 74810 |
| exon | 75096 | 75146 |
| exon | 75237 | 75438 |
| exon | 75865 | 76525 |
| CDS | 72049 | 72402 |
| CDS | 72496 | 73208 |
| CDS | 74585 | 74810 |
| CDS | 75096 | 75146 |
| CDS | 75237 | 75438 |
| CDS | 75865 | 76328 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000719 | NAK (from iTAK) Glycerophospholipid_metabolism |
| coexpression network | CFinderM001747 | NAK (from iTAK) Sulfur_relay_system Thiamine_metabolism Golgi apparatus, cysteine metabolic process, membrane coat, clathrin adaptor complex, cysteine desulfurase activity, regulation of ARF protein signal transduction, cytoskeleton organization, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 31 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.