PH01000530G0230's details annotation
1.Annotation
ICBR annotation: argonaute, putative, expressed
Blast result AT2G27040 : 0.00E+00
Blast annotation: Argonaute family protein
2.Location
Scaffold: PH01000530
Strand: -
| Region | Start | End |
| gene | 126258 | 132069 |
| mRNA | 126258 | 132069 |
| exon | 126258 | 126938 |
| exon | 127031 | 127062 |
| exon | 127143 | 127237 |
| exon | 127356 | 127429 |
| exon | 127555 | 127666 |
| exon | 127769 | 127832 |
| exon | 127955 | 128020 |
| exon | 128100 | 128227 |
| exon | 128355 | 128492 |
| exon | 128580 | 128692 |
| exon | 128778 | 128943 |
| exon | 129014 | 129127 |
| exon | 129224 | 129286 |
| exon | 129368 | 129475 |
| exon | 129583 | 129699 |
| exon | 129805 | 129970 |
| exon | 130137 | 130234 |
| exon | 130324 | 130421 |
| exon | 130581 | 130717 |
| exon | 130833 | 131057 |
| exon | 131152 | 131357 |
| exon | 131470 | 132069 |
| CDS | 126763 | 126938 |
| CDS | 127031 | 127062 |
| CDS | 127143 | 127237 |
| CDS | 127356 | 127429 |
| CDS | 127555 | 127666 |
| CDS | 127769 | 127832 |
| CDS | 127955 | 128020 |
| CDS | 128100 | 128227 |
| CDS | 128355 | 128492 |
| CDS | 128580 | 128692 |
| CDS | 128778 | 128943 |
| CDS | 129014 | 129127 |
| CDS | 129224 | 129286 |
| CDS | 129368 | 129475 |
| CDS | 129583 | 129699 |
| CDS | 129805 | 129970 |
| CDS | 130137 | 130234 |
| CDS | 130324 | 130421 |
| CDS | 130581 | 130717 |
| CDS | 130833 | 131057 |
| CDS | 131152 | 131357 |
| CDS | 131470 | 131709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001195 | nucleic acid binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) C3H Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, response to hormone stimulus, glycerol ether metabolic process, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16486.4 | ArgoN | 56 | 217 |
| PF08699.9 | ArgoL1 | 229 | 277 |
| PF02170.21 | PAZ | 283 | 412 |
| PF16488.4 | ArgoL2 | 422 | 467 |
| PF16487.4 | ArgoMid | 476 | 557 |
| PF02171.16 | Piwi | 566 | 872 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.