PH01000530G0690's details annotation
1.Annotation
ICBR annotation: adhesion regulating molecule family, putative, expressed
Blast result AT2G26590 : 2.00E-100
Blast annotation: regulatory particle non-ATPase 13
2.Location
Scaffold: PH01000530
Strand: +
| Region | Start | End |
| gene | 482680 | 486870 |
| mRNA | 482680 | 486870 |
| exon | 482680 | 483001 |
| exon | 483516 | 483608 |
| exon | 484062 | 484100 |
| exon | 484206 | 484280 |
| exon | 484368 | 484434 |
| exon | 484521 | 484590 |
| exon | 484985 | 485020 |
| exon | 485098 | 485216 |
| exon | 485306 | 485329 |
| exon | 485405 | 485496 |
| exon | 485570 | 485647 |
| exon | 485739 | 485937 |
| exon | 486666 | 486870 |
| CDS | 482978 | 483001 |
| CDS | 483516 | 483608 |
| CDS | 484062 | 484100 |
| CDS | 484206 | 484280 |
| CDS | 484368 | 484434 |
| CDS | 484521 | 484590 |
| CDS | 484985 | 485020 |
| CDS | 485098 | 485216 |
| CDS | 485306 | 485329 |
| CDS | 485405 | 485496 |
| CDS | 485570 | 485647 |
| CDS | 485739 | 485937 |
| CDS | 486666 | 486790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001515 | protein insertion into membrane, transcription, DNA-dependent, exonuclease activity, |
| coexpression network | CFinderM001755 | STE_STE7 (from iTAK) nucleotide-sugar transport, S-adenosylmethionine_biosynthetic_process carbohydrate transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04683.12 | Proteasom_Rpn13 | 17 | 98 |
| PF16550.4 | RPN13_C | 173 | 277 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0005737 | cytoplasm |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.