PH01000531G0120's details annotation
1.Annotation
ICBR annotation: SNARE domain containing protein, putative, expressed
Blast result AT5G61210 : 5.20E-49
Blast annotation: soluble N-ethylmaleimide-sensitive factor adaptor protein 33
2.Location
Scaffold: PH01000531
Strand: +
| Region | Start | End |
| gene | 65343 | 68771 |
| mRNA | 65343 | 68771 |
| exon | 65343 | 66048 |
| exon | 66512 | 66602 |
| exon | 66678 | 66802 |
| exon | 66880 | 66977 |
| exon | 67088 | 67142 |
| exon | 67547 | 67705 |
| exon | 68345 | 68452 |
| exon | 68558 | 68771 |
| CDS | 65728 | 66048 |
| CDS | 66512 | 66602 |
| CDS | 66678 | 66802 |
| CDS | 66880 | 66977 |
| CDS | 67088 | 67142 |
| CDS | 67547 | 67705 |
| CDS | 68345 | 68452 |
| CDS | 68558 | 68701 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001287 | cellular process, homocysteine S-methyltransferase activity, Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.