PH01000531G0210's details annotation
1.Annotation
ICBR annotation: Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed
Blast result AT1G26560 : 0.00E+00
Blast annotation: beta glucosidase 40
2.Location
Scaffold: PH01000531
Strand: -
| Region | Start | End |
| gene | 127141 | 135007 |
| mRNA | 127141 | 135007 |
| exon | 127141 | 127997 |
| exon | 128117 | 128225 |
| exon | 128368 | 128470 |
| exon | 128554 | 128585 |
| exon | 128800 | 129023 |
| exon | 129139 | 129254 |
| exon | 129355 | 129610 |
| exon | 129712 | 129799 |
| exon | 129896 | 129967 |
| exon | 130126 | 130201 |
| exon | 130306 | 130364 |
| exon | 133095 | 133161 |
| exon | 134764 | 135007 |
| CDS | 127823 | 127997 |
| CDS | 128117 | 128225 |
| CDS | 128368 | 128470 |
| CDS | 128554 | 128585 |
| CDS | 128800 | 129023 |
| CDS | 129139 | 129254 |
| CDS | 129355 | 129610 |
| CDS | 129712 | 129799 |
| CDS | 129896 | 129967 |
| CDS | 130126 | 130201 |
| CDS | 130306 | 130364 |
| CDS | 133095 | 133161 |
| CDS | 134764 | 134919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 36 | 508 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cyanoamino acid metabolism | beta-glucosidase [EC:3.2.1.21] | ko00460 | K01188 |
| Phenylpropanoid biosynthesis | beta-glucosidase [EC:3.2.1.21] | ko00940 | K01188 |
| Starch and sucrose metabolism | beta-glucosidase [EC:3.2.1.21] | ko00500 | K01188 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.