PH01000531G0720's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G29390 : 8.00E-108
Blast annotation: RS2-interacting KH protein
2.Location
Scaffold: PH01000531
Strand: +
| Region | Start | End |
| gene | 390657 | 398233 |
| mRNA | 390657 | 398233 |
| exon | 390657 | 391162 |
| exon | 391310 | 391550 |
| exon | 391674 | 391772 |
| exon | 391896 | 391930 |
| exon | 392004 | 392079 |
| exon | 392735 | 392863 |
| exon | 393753 | 393839 |
| exon | 394048 | 394141 |
| exon | 394220 | 394337 |
| exon | 394751 | 395246 |
| exon | 395920 | 395955 |
| exon | 397198 | 397627 |
| exon | 397723 | 398233 |
| CDS | 391104 | 391162 |
| CDS | 391310 | 391550 |
| CDS | 391674 | 391772 |
| CDS | 391896 | 391930 |
| CDS | 392004 | 392079 |
| CDS | 392735 | 392863 |
| CDS | 393753 | 393839 |
| CDS | 394048 | 394141 |
| CDS | 394220 | 394337 |
| CDS | 394751 | 395246 |
| CDS | 395920 | 395955 |
| CDS | 397198 | 397627 |
| CDS | 397723 | 397844 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001320 | CMGC_CDK-PITSLRE (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.