PH01000532G0340's details annotation
1.Annotation
ICBR annotation: GHMP kinases ATP-binding protein, putative, expressed
Blast result AT1G31910 : 7.90E-34
Blast annotation: GHMP kinase family protein
2.Location
Scaffold: PH01000532
Strand: +
| Region | Start | End |
| gene | 229544 | 231018 |
| mRNA | 229544 | 231018 |
| exon | 229544 | 230326 |
| exon | 230441 | 230542 |
| exon | 230575 | 231018 |
| CDS | 230027 | 230326 |
| CDS | 230441 | 230542 |
| CDS | 230575 | 230595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00288.25 | GHMP_kinases_N | 10 | 85 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | phosphomevalonate kinase [EC:2.7.4.2] | ko00900 | K00938 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.