PH01000532G0440's details annotation
1.Annotation
ICBR annotation: serine palmitoyltransferase 1, putative, expressed
Blast result AT4G36480 : 3.00E-180
Blast annotation: long-chain base1
2.Location
Scaffold: PH01000532
Strand: +
| Region | Start | End |
| gene | 303662 | 308752 |
| mRNA | 303662 | 308752 |
| exon | 303662 | 304571 |
| exon | 304664 | 304758 |
| exon | 304873 | 304964 |
| exon | 305177 | 305245 |
| exon | 306022 | 306115 |
| exon | 306196 | 306268 |
| exon | 306353 | 306485 |
| exon | 306844 | 307018 |
| exon | 307192 | 307332 |
| exon | 307538 | 307633 |
| exon | 307732 | 307873 |
| exon | 308222 | 308349 |
| exon | 308431 | 308752 |
| CDS | 304460 | 304571 |
| CDS | 304664 | 304758 |
| CDS | 304873 | 304964 |
| CDS | 305177 | 305245 |
| CDS | 306022 | 306115 |
| CDS | 306196 | 306268 |
| CDS | 306353 | 306485 |
| CDS | 306844 | 307018 |
| CDS | 307192 | 307332 |
| CDS | 307538 | 307633 |
| CDS | 307732 | 307873 |
| CDS | 308222 | 308349 |
| CDS | 308431 | 308607 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000036 | intrinsic to endoplasmic reticulum membrane, GT64 GlycosylTransferases Alanine,_aspartate_and_glutamate_metabolism Nicotinate_and_nicotinamide_metabolism Sphingolipid_metabolism transferase activity, transferring hexosyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 135 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sphingolipid metabolism | serine palmitoyltransferase [EC:2.3.1.50] | ko00600 | K00654 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.