Annotation of co-expression genes

PH01000533G0940's details annotation

1.Annotation

ICBR annotation: ferric reductase, putative, expressed

Blast result AT1G19230 : 3.00E-128
Blast annotation: Riboflavin synthase-like superfamily protein

2.Location

Scaffold: PH01000533
Strand: -

RegionStartEnd
gene627748631175
mRNA627748631175
exon627748627914
exon628043628121
exon628312628440
exon628579628764
exon628856629015
exon629103629273
exon629364629482
exon630255630350
exon631098631175
CDS627805627914
CDS628043628121
CDS628312628440
CDS628579628764
CDS628856629015
CDS629103629273
CDS629364629482
CDS630255630350
CDS631098631160

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001110Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08022.11FAD_binding_848163
PF08030.11NAD_binding_6170352

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
PhagosomeNADPH oxidaseko04145K08008

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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