PH01000535G0330's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G00090 : 2.20E-80
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000535
Strand: -
| Region | Start | End |
| gene | 272738 | 277032 |
| mRNA | 272738 | 277032 |
| exon | 272738 | 273309 |
| exon | 274918 | 275213 |
| exon | 275298 | 275358 |
| exon | 275605 | 275710 |
| exon | 276209 | 277032 |
| CDS | 273137 | 273309 |
| CDS | 274918 | 275213 |
| CDS | 275298 | 275358 |
| CDS | 275605 | 275710 |
| CDS | 276209 | 276445 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 91 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.