PH01000535G0640's details annotation
1.Annotation
ICBR annotation: CBS domain containing membrane protein, putative, expressed
Blast result AT1G09020 : 4.00E-142
Blast annotation: homolog of yeast sucrose nonfermenting 4
2.Location
Scaffold: PH01000535
Strand: -
| Region | Start | End |
| gene | 492478 | 505541 |
| mRNA | 492478 | 505541 |
| exon | 492478 | 494008 |
| exon | 494091 | 494199 |
| exon | 494453 | 494746 |
| exon | 494824 | 494967 |
| exon | 496065 | 496312 |
| exon | 497483 | 497600 |
| exon | 498110 | 498179 |
| exon | 498288 | 498351 |
| exon | 498581 | 498754 |
| exon | 498859 | 499003 |
| exon | 499645 | 499776 |
| exon | 501364 | 501453 |
| exon | 502031 | 502090 |
| exon | 502171 | 502305 |
| exon | 502809 | 502994 |
| exon | 504165 | 505541 |
| CDS | 493869 | 494008 |
| CDS | 494091 | 494199 |
| CDS | 494453 | 494746 |
| CDS | 494824 | 494967 |
| CDS | 496065 | 496312 |
| CDS | 497483 | 497600 |
| CDS | 498110 | 498179 |
| CDS | 498288 | 498351 |
| CDS | 498581 | 498754 |
| CDS | 498859 | 499003 |
| CDS | 499645 | 499776 |
| CDS | 501364 | 501453 |
| CDS | 502031 | 502090 |
| CDS | 502171 | 502305 |
| CDS | 502809 | 502994 |
| CDS | 504165 | 504233 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate-Binding_Modules | CBM48 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00571.27 | CBS | 314 | 355 |
| PF02482.18 | Ribosomal_S30AE | 491 | 586 |
| PF16321.4 | Ribosom_S30AE_C | 643 | 695 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0044238 | primary metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.