PH01000536G0710's details annotation
1.Annotation
ICBR annotation: CESA3 - cellulose synthase, expressed
Blast result AT4G39350 : 2.00E-130
Blast annotation: cellulose synthase A2
2.Location
Scaffold: PH01000536
Strand: -
| Region | Start | End |
| gene | 406056 | 423476 |
| mRNA | 406056 | 423476 |
| exon | 406056 | 406324 |
| exon | 406415 | 406534 |
| exon | 407183 | 407305 |
| exon | 407607 | 407655 |
| exon | 408256 | 408325 |
| exon | 408420 | 408495 |
| exon | 409379 | 409440 |
| exon | 409525 | 409760 |
| exon | 410020 | 410094 |
| exon | 410454 | 410650 |
| exon | 410889 | 411171 |
| exon | 411265 | 411477 |
| exon | 411576 | 411701 |
| exon | 411814 | 411951 |
| exon | 412254 | 412392 |
| exon | 412480 | 423476 |
| CDS | 406260 | 406324 |
| CDS | 406415 | 406534 |
| CDS | 407183 | 407305 |
| CDS | 407607 | 407655 |
| CDS | 408256 | 408325 |
| CDS | 408420 | 408495 |
| CDS | 409379 | 409440 |
| CDS | 409525 | 409760 |
| CDS | 410020 | 410094 |
| CDS | 410454 | 410650 |
| CDS | 410889 | 411171 |
| CDS | 411265 | 411477 |
| CDS | 411576 | 411701 |
| CDS | 411814 | 411951 |
| CDS | 412254 | 412392 |
| CDS | 412480 | 412556 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03552.13 | Cellulose_synt | 72 | 391 |
| PF03552.13 | Cellulose_synt | 416 | 497 |
| PF16455.4 | UBD | 583 | 680 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.