PH01000540G0240's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT1G16890 : 7.70E-83
Blast annotation: ubiquitin-conjugating enzyme 36
2.Location
Scaffold: PH01000540
Strand: -
| Region | Start | End |
| gene | 168268 | 171508 |
| mRNA | 168268 | 171508 |
| exon | 168268 | 168531 |
| exon | 168616 | 168713 |
| exon | 169381 | 169454 |
| exon | 169531 | 169572 |
| exon | 169966 | 170024 |
| exon | 170851 | 170937 |
| exon | 171215 | 171242 |
| exon | 171342 | 171508 |
| CDS | 168494 | 168531 |
| CDS | 168616 | 168713 |
| CDS | 169381 | 169454 |
| CDS | 169531 | 169572 |
| CDS | 169966 | 170024 |
| CDS | 170851 | 170937 |
| CDS | 171215 | 171242 |
| CDS | 171342 | 171377 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 9 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19] | ko04120 | K10580 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.