PH01000540G0800's details annotation
1.Annotation
ICBR annotation: nucleobase-ascorbate transporter, putative, expressed
Blast result AT2G34190 : 1.00E-104
Blast annotation: Xanthine/uracil permease family protein
2.Location
Scaffold: PH01000540
Strand: +
| Region | Start | End |
| gene | 567402 | 572872 |
| mRNA | 567402 | 572872 |
| exon | 567402 | 568841 |
| exon | 568934 | 569031 |
| exon | 569267 | 569443 |
| exon | 569598 | 569698 |
| exon | 570988 | 571063 |
| exon | 571629 | 571826 |
| exon | 572155 | 572241 |
| exon | 572357 | 572872 |
| CDS | 568748 | 568841 |
| CDS | 568934 | 569031 |
| CDS | 569267 | 569443 |
| CDS | 569598 | 569698 |
| CDS | 570988 | 571063 |
| CDS | 571629 | 571826 |
| CDS | 572155 | 572241 |
| CDS | 572357 | 572395 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00860.19 | Xan_ur_permease | 33 | 236 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.