Annotation of co-expression genes

PH01000540G0820's details annotation

1.Annotation

ICBR annotation: nucleobase-ascorbate transporter, putative, expressed

Blast result AT2G34190 : 2.50E-79
Blast annotation: Xanthine/uracil permease family protein

2.Location

Scaffold: PH01000540
Strand: +

RegionStartEnd
gene574465576813
mRNA574465576813
exon574465574545
exon574924575015
exon575090575167
exon575275575435
exon575609576813
CDS574496574545
CDS574924575015
CDS575090575167
CDS575275575435
CDS575609575821

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000168RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
RLK-Pelle_LRR-I-2 (from iTAK)
ATP binding,
identical protein binding,
negative regulation of catalytic activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00860.19Xan_ur_permease17109

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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