PH01000543G0340's details annotation
1.Annotation
ICBR annotation: chaperonin, putative, expressed
Blast result AT5G20720 : 1.20E-92
Blast annotation: chaperonin 20
2.Location
Scaffold: PH01000543
Strand: +
| Region | Start | End |
| gene | 254892 | 257441 |
| mRNA | 254892 | 257441 |
| exon | 254892 | 255190 |
| exon | 255746 | 255925 |
| exon | 256469 | 256624 |
| exon | 256763 | 256840 |
| exon | 257003 | 257441 |
| CDS | 255017 | 255190 |
| CDS | 255746 | 255925 |
| CDS | 256469 | 256624 |
| CDS | 256763 | 256840 |
| CDS | 257003 | 257176 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00166.20 | Cpn10 | 62 | 151 |
| PF00166.20 | Cpn10 | 160 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.