PH01000543G0550's details annotation
1.Annotation
ICBR annotation: cyclin-related protein, putative, expressed
Blast result AT2G41830 : 2.00E-147
Blast annotation: Uncharacterized protein
2.Location
Scaffold: PH01000543
Strand: -
| Region | Start | End |
| gene | 377692 | 393779 |
| mRNA | 377692 | 393779 |
| exon | 377692 | 378976 |
| exon | 379308 | 379520 |
| exon | 379749 | 379874 |
| exon | 379968 | 380105 |
| exon | 380205 | 380426 |
| exon | 381010 | 381137 |
| exon | 382136 | 382229 |
| exon | 383305 | 383850 |
| exon | 384856 | 385121 |
| exon | 385382 | 385451 |
| exon | 386232 | 386381 |
| exon | 386479 | 386907 |
| exon | 386988 | 387137 |
| exon | 387274 | 387566 |
| exon | 388018 | 388201 |
| exon | 389046 | 389093 |
| exon | 389467 | 389595 |
| exon | 389719 | 389833 |
| exon | 391581 | 391696 |
| exon | 392681 | 392755 |
| exon | 392977 | 393779 |
| CDS | 378812 | 378976 |
| CDS | 379308 | 379520 |
| CDS | 379749 | 379874 |
| CDS | 379968 | 380105 |
| CDS | 380205 | 380426 |
| CDS | 381010 | 381137 |
| CDS | 382136 | 382229 |
| CDS | 383305 | 383850 |
| CDS | 384856 | 385121 |
| CDS | 385382 | 385451 |
| CDS | 386232 | 386381 |
| CDS | 386479 | 386907 |
| CDS | 386988 | 387137 |
| CDS | 387274 | 387566 |
| CDS | 388018 | 388201 |
| CDS | 389046 | 389093 |
| CDS | 389467 | 389595 |
| CDS | 389719 | 389833 |
| CDS | 391581 | 391696 |
| CDS | 392681 | 392755 |
| CDS | 392977 | 393111 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00078.26 | RVT_1 | 721 | 877 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0005488 | binding |
| GO:0006278 | RNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.