PH01000545G0990's details annotation
1.Annotation
ICBR annotation: DUF1336 domain containing protein, expressed
Blast result AT2G28320 : 7.50E-29
Blast annotation: Pleckstrin homology (PH) and lipid-binding START domains-containing protein
2.Location
Scaffold: PH01000545
Strand: +
| Region | Start | End |
| gene | 617008 | 622952 |
| mRNA | 617008 | 622952 |
| exon | 617008 | 617797 |
| exon | 618389 | 618514 |
| exon | 619142 | 619216 |
| exon | 619313 | 619366 |
| exon | 619480 | 619545 |
| exon | 619625 | 619683 |
| exon | 621656 | 622952 |
| CDS | 617588 | 617797 |
| CDS | 618389 | 618514 |
| CDS | 619142 | 619216 |
| CDS | 619313 | 619366 |
| CDS | 619480 | 619545 |
| CDS | 619625 | 619683 |
| CDS | 621656 | 622127 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005543 | phospholipid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.